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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Angel Ulloa | 25th | Frank Fraire | Tied for 27th | 26th |
| First Basemen | Wen-huan Niu | 22nd | Orlando Reyes | 15th | 20th |
| Second Basemen | Craig Lightsey | 22nd | Alexis Larosa | 1st | 12th |
| Third Basemen | Manny Venzor | 20th | Jack Honeyman | Tied for 19th | 19th |
| Shortstops | Travis Glazebrook | 20th | Gil Jave | 8th | 9th |
| Left Fielders | Marco Feron | 21st | Dalian Bembé | 7th | 18th |
| Center Fielders | 29th | Bryan Kramb | 21st | 30th | |
| Right Fielders | Finn West | 20th | B.J. Reinshagen | 11th | 15th |
| Starting Pitchers | James Wilkinson | 30th | Abraham Plancarte | 7th | 27th |
| Relievers | Manny Arango | 24th | Rickey Cancino | 22nd | 28th |
| Closers | Manny Arango | 27th | Rickey Cancino | 18th | 21st |
